CASUAL CHEMISTRY

Using lactic acid derived auxiliary chemistry to perform highly diastereoselective anti aldol reactions (lactate aldols). A full explanation evolving a Zimmerman-Traxler Transition State into a chelated boat-like transition state where the configuration of an alpha (prime) stereocentre on the boron enolate can induce stereochemical control on the product. The reaction relies on a stabilising, non-classical hydrogen bond with the formyl hydrogen atom of the activated carbonyl group. Links to other videos referenced --------------------------------------------------- Introduction Part 1: https://youtu.be/XZ30Fup3xyA Introduction Part 2: https://youtu.be/qFe5T7WLHDY Felkin-Anh Model: https://youtu.be/JvF5NQ54-z4 A simple boron-mediated aldol reaction: https://youtu.be/b9KWPWeVkZg A retrosynthesis using auxiliary chemistry https://youtu.be/zlclJzdrtBI References from video ------------------------------------ Studies on Lactate Aldol Reactions: Tetrahedron Lett. 1994, 35, 9083-9086 https://doi.org/10.1016/0040-4039(94)88434-X Tetrahedron Lett. 1994, 35, 48, 9087-9090 https://doi.org/10.1016/0040-4039(94)88435-8 J. Org. Chem. 1992, 57, 19, 5173–5177 https://doi.org/10.1021/jo00045a033

For removing a hydroxyl group using controlled radical chemistry. The overall transformation reduces an alcohol to an alkyl group.

For asymmetric synthesis of primary amines. A stereocentre is formed by direct addition of a Grignard nucleophile to a sulfinimide (sulphinimide) with a stereogenic sulfur centre. The sulfinimide is formed by condensation of the enantiomerically enriched sulfoxide (sulphoxide) with a carbonyl, such as an aldehyde or ketone. The transition state is thought to be a chelated Zimmerman-Traxler type six-membered ring.

Eschenmoser fragmentation of an epoxy hydrazine. The epoxide has likely formed by conjugate addition to an alpha,beta-unsaturated ketone. The reaction is driven by base here but the fragmentation can also be started with acid. After releasing ring strain in the epoxide, a further fragmentation forms a new carbonyl and allows two really good leaving groups to leave - nitrogen gas and the tosyl anion. In this process an alkyne is formed with a triple carbon-carbon bond.

Mechanism for the isomerisation of epoxy alcohols to the terminal epoxide. It is likely that the initial epoxide was generated by oxidation of an allylic alcohol - perhaps by asymmetric catalysis using a Sharpless Asymmetric Epoxidation reaction. The terminal epoxide is favoured as it has less steric strain from eclipsing interactions.

Organic chemistry mechanism of a sulfoxide (sulphoxide) reacting with acetic anhydride to give a thiol-acetate via elimination

Synthesis of quinoline. Conjugate addition of aniline to the 1,4 position of acrolein. Mediated by acid. Cyclisation by electrophilic aromatic substitution on to an activated carbonyl group. After rearomatisation, water is eliminated likely by an E1 mechanism. The intermediate is then oxidised by a separate oxidising agent such as nitrobenzene.

Narasaka reduction mechanism where a beta hydroxy-ketone is chelated first with a boron based bidentate Lewis acid. The chelated structure prefers to adopt a half-chair six-membered ring conformation. Attack of an external borohydride nucleophile is from the face of the carbonyl that leads to a chair-like transition state (rather than a twist boat) to the 1,3-syn diol product. The reaction is very diastereoselective.

Reaction mechanism for the Pinacol Rearrangement in Organic Chemistry and Synthesis. A reductive coupling using magnesium metal followed by an acid mediated migration to give a spiro centre.

Chiral sodium borohydride for reduction of ketones in organic chemistry. The proline based species can be used like this as a type of asymmetric catalysis to form one enantiomer of product in high enantiomeric excess (ee).

Named reaction in Organic Chemistry. Mechanism in longer video.

Chiral auxiliary in Organic Chemistry #chemistry #organichemistry

Using chiral auxiliaries for asymmetric synthesis - diastereoselective aldol reactions with chelating enolates and cyclic transition states. The transition states can be constructed using the Zimmerman-Traxler model. Motivation in my previous video: https://youtu.be/XZ30Fup3xyA Following selective enolisation, either by hard enolisation with strong bases such as LDA or by soft enolisation methods using a Lewis acid and a weak base, a stereodefined enolate can react with aldehydes in an aldol reaction. Both the nucleophile and electrophile are prochiral and so we form two new stereocentres from this reaction. The reaction is diastereoselective. The diastereoselectivity can be increased by using chelation into a six-membered ring transition state, in which big groups prefer to go equatorial. A chiral auxiliary can be used to select further for a particular combination of stereocentres that can be formed in this reaction. The chiral auxiliary adds another level of diastereoselectivity and the Evans auxiliary can lead to very high d.r. (diastereomeric ratio). When the aldol reaction is complete, the chiral auxiliary can be cleaved carefully, separate by chromatograhpy, and recycled. Another type of chiral auxiliary is the lactate auxiliary which uses a stereocentre derived from lactic acid. Both enantiomers of lactic acid are available in the chiral pool. There are similar types of diastereoselectivity observed with these chiral auxiliaries and this topic will be expanded upon in my next video. REFERENCES Evans Aldol Reaction: J. Am. Chem. Soc. 1981, 103, 8, 2127–2129 https://doi.org/10.1021/ja00398a058 Lactate Aldol Auxiliaries: Tet.Letters Vol. 35. No. 48, pp. 9083-9086. 1994 https://doi.org/10.1016/0040-4039(94)88434-X FURTHER DETAIL Felkin-Anh Model: https://youtu.be/JvF5NQ54-z4 Boron aldol reaction: https://youtu.be/b9KWPWeVkZg Another example of use of chiral auxiliaries: https://youtu.be/zlclJzdrtBI #chemistry #organicchemistry #education

Introduction to stereoselective synthesis via retrosynthetic analysis. How to change reagents without changing disconnections in a retrosynthesis to introduce diastereoselectivity and enantioselectivity. Discussion based on this literature synthesis: https://doi.org/10.1002/anie.201310164 Boron Enolates and Aldol Reactions: https://youtu.be/b9KWPWeVkZg Ultimate Guide to the Felkin-Anh Model: https://youtu.be/JvF5NQ54-z4 #chemistry #education #organicchemistry

A disconnection approach to a retrosynthesis of this organic molecule. The different ring systems can be made by classical named reactions involving metals in the forward synthesis. The 1,4-cyclohexadiene is clue for using a Birch reduction disconnection back to the benzene ring in the retrosynthesis. A mixture of sodium metal dissolved in liquid ammonia makes a solution of solvated electrons that act as a powerful reducing agent. Solvated electrons are transferred into the benzene pi system (pi cloud) to give a conjugated carbanion. This carbanion can be protonated by an external source of H+ such as an alcohol. The video includes a discussion of the reaction mechanism and the effect of both electron-withdrawing and electron-donating substituents on the regioselectivity for the Birch reduction. The cyclopropane can be synthesised by Simmons-Smith reaction. The reagent for the Simmons-Smith cyclopropanation is a carbenoid formed by mixing zinc metal with diiodomethane. In this retrosynthetic analysis, the substrate for cyclopropanation is a chiral allylic alcohol. Due to restricted rotation, high levels of diastereoselectivity for cyclopropanation should be observed as the Z geometry of alkene next to the chiral centre leads to just one low energy conformation (energy minimum for this conformer). The Simmons-Smith zinc carbenoid reagent will coordinate to the hydroxyl group on the stereocentre and direct reaction to the same face. The remainder of the retrosynthesis shows that the key intermediates can be made using simple disconnections and redox steps back to simple benzene ring systems. 1,2-diX difunctional patterns are common here which can nudge towards the use of epoxides in a forward synthesis, although other synthetic pathways are possible. #chemistry #organicchemistry #education

Retrosynthetic analysis of a highly potent, selective, and orally bioavailable factor Xa inhibitor originally made by Bristol-Myers Squibb (BMS). The disconnection approach uses an amide to break the molecule into two halves, each of which contains two aromatic systems. These aromatic systems include heterocycles – a pyrazole, an imidazole, and a benzisoxazole. The retrosynthesis will construct the pyrazole and benisoxazole using common disconnections, but taking care to account for regioselectivity challenges. For the construction of the pyrazole, a furan ring can be used as a masking group (protecting group) for a carboxylic acid to help differentiate a 1,3-dicarbonyl on chemoselectivity (electrophilicity) arguments when a hydrazine is required to be a nucleophile. BMS Medicinal Chemistry route and original paper that this video is based on: J. Med. Chem. 2005, 48, 6, 1729 https://doi.org/10.1021/jm0497949 Other key steps in the organic chemistry synthesis include an Ullman coupling between two aromatic rings. This is useful in the medicinal chemistry approach as it makes analogue synthesis more easy and convergent. The benzisoxazole is synthesised from and SNAr nucleophilic substitution step of a hydroxylamine; intramolecular attack on to a nearby nitrile group completes the heterocycle synthesis. More retrosynthesis videos: https://www.youtube.com/playlist?list=PLavaRHHaRimVhyZD79H8g08cfhxrZMcB1 More heterocyclic chemistry videos: https://www.youtube.com/playlist?list=PLavaRHHaRimUCE5F83Ier19ksegJvJL7h Chemistry used in this video includes: SNAr (Nucleophilic Aromatic Substitution) Furan oxidation Lithiation of imidazole Reductive amination Ullman coupling (Ullman reaction) Dehydration of amides Friedel-Crafts Iodination of benzene Bromination of benzene Grignard reagents Heterocycle formation Isoxazole formation Pyrazole construction Regioselectivity for reactions on benzene rings Amide formation from acid chlorides Use of copper salts in organic chemistry Aromatisation reactions #chemistry #organicchemistry #science

Full video on my channel. Retrosynthetic analysis using Diels-Alder reaction and homologation of aldehyde. Use of acetylene and epoxide to set up 1,2 functional group relationship. Disconnection approach and forwards synthesis explained. Retrosynthesis 11 - Organic Chemistry https://youtu.be/uSzn4FdRD2g #chemistry #organicchemistry #science